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By Fan T.-H.

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72. Cooper, H. , Hudgins, R. , and Marshall A. G. (2002) Characterization of amino acid side chain losses in electron capture dissociation. J. Am. Soc. Mass Spectrom. 13, 241–249. 73. Zubarev, R. , Kruger, N. , Fridriksson, E. , et al. (1999) Electron capture dissociation of gaseous multiply-charged proteins is favoured at disulphide bonds and other sites of high hydrogen atom affinity. J. Am. Chem. Soc. 121, 2857–2862. 74. Bakhtiar, R. and Guan, Z. (2005) Electron capture dissociation mass spectrometry in characterization of post-translational modifications.

1984) Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed. Mass Spectrom. 11, 601. 59. , and Smilansky, Z. (2003) Intensity-based statistical scorer for tandem mass spectrometry. Anal. Chem. 75, 435–444. 60. Summerfield, S. , Bolgar, M. , and Gaskell, S. J. (1997) Promotion and stabilization of ions in peptide b1 phenythiocarbamoyl derivatives: analogies with condensed-phase chemistry. J. Mass Spectrom. 32, 225–231. 61. Schlosser, L. and Lehmann, W. D. (2002) Patchwork peptide sequencing: Extraction of sequence information from accurate mass data of peptide tandem mass spectra recorded at high resolution.

The MudPIT method appears not to underrepresent any particular protein group (82) and to have a high dynamic range compared with 2D-GE. An additional advantage is that MudPIT can be automated to a larger extent than 2DGE. The drawback is that quantification is not easily obtained. Quantification with the MudPIT method can be achieved by comparing protein extracts from different sources using different stable isotope labeling for the different sources. One example hereof is the ICAT technique (83), which is outlined in Chapter 12.

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A Bayesian analysis for the seismic data on Taiwan by Fan T.-H.

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